J3_6QDW_003
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 6QDW|1|b|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QDW_003 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0612
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6QDW|1|b|A|56
6QDW|1|b|C|57
*
6QDW|1|b|G|70
6QDW|1|b|A|71
6QDW|1|b|U|72
6QDW|1|b|A|73
6QDW|1|b|A|74
6QDW|1|b|G|75
6QDW|1|b|C|76
*
6QDW|1|b|G|110
6QDW|1|b|A|111
6QDW|1|b|U|112
6QDW|1|b|U|113
6QDW|1|b|U|114
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L29
- Chain 6
- 50S ribosomal protein L34
- Chain t
- 50S ribosomal protein L23
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