J3_6QDW_004

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6QDW|1|b|U|688, 6QDW|1|b|A|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QDW_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0719

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|U|685
6QDW|1|b|G|686
6QDW|1|b|A|687
6QDW|1|b|U|688
6QDW|1|b|C|689
6QDW|1|b|U|690
6QDW|1|b|A|691
*
6QDW|1|b|U|775
6QDW|1|b|G|776
6QDW|1|b|G|777
*
6QDW|1|b|C|793
6QDW|1|b|A|794
6QDW|1|b|A|795
6QDW|1|b|A|796

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain z

Gamma-crystallin B