3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
6QDW|1|b|A|2522, 6QDW|1|b|U|2523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QDW_010 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0672
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

6QDW|1|b|C|2521
6QDW|1|b|A|2522
6QDW|1|b|U|2523
6QDW|1|b|C|2524
*
6QDW|1|b|G|2549
6QDW|1|b|U|2550
6QDW|1|b|A|2551
*
6QDW|1|b|U|2565
6QDW|1|b|U|2566
6QDW|1|b|U|2567
6QDW|1|b|A|2568
6QDW|1|b|A|2569
6QDW|1|b|A|2570
6QDW|1|b|G|2571

Current chains

Chain b
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain k
50S ribosomal protein L14

Coloring options:


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