J3_6QDW_010
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6QDW|1|b|A|2522, 6QDW|1|b|U|2523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QDW_010 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.0672
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6QDW|1|b|C|2521
6QDW|1|b|A|2522
6QDW|1|b|U|2523
6QDW|1|b|C|2524
*
6QDW|1|b|G|2549
6QDW|1|b|U|2550
6QDW|1|b|A|2551
*
6QDW|1|b|U|2565
6QDW|1|b|U|2566
6QDW|1|b|U|2567
6QDW|1|b|A|2568
6QDW|1|b|A|2569
6QDW|1|b|A|2570
6QDW|1|b|G|2571
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
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