J3_6QDW_011

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUG*CC*GAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QDW_011 not in the Motif Atlas

Homologous match to J3_5J7L_047

Geometric discrepancy: 0.2416

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6QDW|1|b|C|2793
6QDW|1|b|U|2794
6QDW|1|b|G|2795
*
6QDW|1|b|C|2809
6QDW|1|b|C|2810
*
6QDW|1|b|G|2896
6QDW|1|b|A|2897
6QDW|1|b|G|2898

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3