3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
6QDW|1|b|A|2392, 6QDW|1|b|U|2394, 6QDW|1|b|A|2430
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QDW_018 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.078
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6QDW|1|b|G|2286
6QDW|1|b|C|2287
6QDW|1|b|A|2288
*
6QDW|1|b|U|2388
6QDW|1|b|C|2389
6QDW|1|b|A|2390
6QDW|1|b|U|2391
6QDW|1|b|A|2392
6QDW|1|b|G|2393
6QDW|1|b|U|2394
6QDW|1|b|G|2395
6QDW|1|b|A|2396
6QDW|1|b|U|2397
6QDW|1|b|C|2398
6QDW|1|b|C|2399
*
6QDW|1|b|G|2425
6QDW|1|b|C|2426
6QDW|1|b|U|2427
6QDW|1|b|C|2428
6QDW|1|b|A|2429
6QDW|1|b|A|2430
6QDW|1|b|C|2431

Current chains

Chain b
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L33
Chain 7
50S ribosomal protein L35
Chain l
50S ribosomal protein L15
Chain y
50S ribosomal protein L27

Coloring options:


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