J3_6QIK_001
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6QIK|1|A|G|120, 6QIK|1|A|A|121, 6QIK|1|A|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QIK_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.1835
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6QIK|1|A|C|113
6QIK|1|A|A|114
6QIK|1|A|A|115
6QIK|1|A|A|116
6QIK|1|A|U|117
6QIK|1|A|U|118
6QIK|1|A|U|119
6QIK|1|A|G|120
6QIK|1|A|A|121
6QIK|1|A|A|122
6QIK|1|A|A|123
*
6QIK|1|A|U|149
6QIK|1|A|A|150
6QIK|1|A|A|151
6QIK|1|A|U|152
6QIK|1|A|U|153
6QIK|1|A|U|154
6QIK|1|A|G|155
6QIK|1|A|G|156
6QIK|1|A|A|157
6QIK|1|A|G|158
*
6QIK|1|A|C|263
6QIK|1|A|G|264
6QIK|1|A|A|265
6QIK|1|A|A|266
6QIK|1|A|G|267
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L8-A
- Chain K
- 60S ribosomal protein L13-A
- Chain O
- 60S ribosomal protein L15-A
- Chain Z
- 60S ribosomal protein L35-A
- Chain h
- 60S ribosomal protein L36-A
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