J3_6QIK_002
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QIK_002 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.0862
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6QIK|1|A|A|369
6QIK|1|A|U|370
6QIK|1|A|G|371
6QIK|1|A|A|372
6QIK|1|A|A|373
6QIK|1|A|A|374
6QIK|1|A|A|375
6QIK|1|A|G|376
*
6QIK|1|A|C|403
6QIK|1|A|G|404
*
6QIK|1|y|C|19
6QIK|1|y|U|20
Current chains
- Chain A
- 25S ribosomal RNA
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain U
- 60S ribosomal protein L17-A
- Chain X
- 60S ribosomal protein L26-A
- Chain k
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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