3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
6QIK|1|A|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QIK_003 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.108
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

6QIK|1|A|U|502
6QIK|1|A|C|503
*
6QIK|1|A|G|588
6QIK|1|A|A|589
6QIK|1|A|G|590
6QIK|1|A|G|591
6QIK|1|A|A|592
6QIK|1|A|C|593
6QIK|1|A|U|594
6QIK|1|A|G|595
6QIK|1|A|C|596
6QIK|1|A|G|597
*
6QIK|1|A|C|606
6QIK|1|A|A|607
6QIK|1|A|A|608
6QIK|1|A|G|609
6QIK|1|A|G|610
6QIK|1|A|A|611

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L4-A
Chain G
60S ribosomal protein L6-A
Chain b
60S ribosomal protein L7-A
Chain e
60S ribosomal protein L32

Coloring options:


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