3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAUAGCGAACAAGUAC*GGAAAG*CUUG
Length
27 nucleotides
Bulged bases
6QIK|1|A|U|343, 6QIK|1|A|A|351, 6QIK|1|y|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QIK_019 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0657
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6QIK|1|A|C|340
6QIK|1|A|G|341
6QIK|1|A|A|342
6QIK|1|A|U|343
6QIK|1|A|A|344
6QIK|1|A|G|345
6QIK|1|A|C|346
6QIK|1|A|G|347
6QIK|1|A|A|348
6QIK|1|A|A|349
6QIK|1|A|C|350
6QIK|1|A|A|351
6QIK|1|A|A|352
6QIK|1|A|G|353
6QIK|1|A|U|354
6QIK|1|A|A|355
6QIK|1|A|C|356
*
6QIK|1|A|G|363
6QIK|1|A|G|364
6QIK|1|A|A|365
6QIK|1|A|A|366
6QIK|1|A|A|367
6QIK|1|A|G|368
*
6QIK|1|y|C|21
6QIK|1|y|U|22
6QIK|1|y|U|23
6QIK|1|y|G|24

Current chains

Chain A
25S ribosomal RNA
Chain y
5.8S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L4-A
Chain X
60S ribosomal protein L26-A
Chain i
60S ribosomal protein L37-A
Chain k
60S ribosomal protein L39
Chain z
Cytoplasmic 60S subunit biogenesis factor REH1

Coloring options:


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