J3_6QNQ_029
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 6QNQ|1|1G|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QNQ_029 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1332
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6QNQ|1|1G|U|672
6QNQ|1|1G|G|673
*
6QNQ|1|1G|C|717
6QNQ|1|1G|G|718
6QNQ|1|1G|C|719
6QNQ|1|1G|C|720
6QNQ|1|1G|G|721
6QNQ|1|1G|A|722
6QNQ|1|1G|U|723
6QNQ|1|1G|G|724
6QNQ|1|1G|G|725
*
6QNQ|1|1G|C|732
6QNQ|1|1G|A|733
6QNQ|1|1G|G|734
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 2A
- 30S ribosomal protein S11
- Chain 4L
- mRNA
- Chain 52
- 30S ribosomal protein S6
- Chain 6A
- 30S ribosomal protein S15
- Chain 9A
- 30S ribosomal protein S18
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