3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
6QNQ|1|1G|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QNQ_029 not in the Motif Atlas
Homologous match to J3_6CZR_017
Geometric discrepancy: 0.1332
The information below is about J3_6CZR_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.3
Basepair signature
cWW-F-cWW-F-F-tWW-F-cWW-F
Number of instances in this motif group
5

Unit IDs

6QNQ|1|1G|U|672
6QNQ|1|1G|G|673
*
6QNQ|1|1G|C|717
6QNQ|1|1G|G|718
6QNQ|1|1G|C|719
6QNQ|1|1G|C|720
6QNQ|1|1G|G|721
6QNQ|1|1G|A|722
6QNQ|1|1G|U|723
6QNQ|1|1G|G|724
6QNQ|1|1G|G|725
*
6QNQ|1|1G|C|732
6QNQ|1|1G|A|733
6QNQ|1|1G|G|734

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain 2A
30S ribosomal protein S11
Chain 4L
mRNA
Chain 52
30S ribosomal protein S6
Chain 6A
30S ribosomal protein S15
Chain 9A
30S ribosomal protein S18

Coloring options:


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