J3_6QNQ_045

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6QNQ|1|1H|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNQ_045 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1192

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6QNQ|1|1H|G|1344
6QNQ|1|1H|C|1345
6QNQ|1|1H|G|1346
6QNQ|1|1H|G|1347
6QNQ|1|1H|G|1348
6QNQ|1|1H|A|1349
6QNQ|1|1H|C|1350
*
6QNQ|1|1H|G|1381
6QNQ|1|1H|G|1382
6QNQ|1|1H|C|1383
6QNQ|1|1H|A|1384
6QNQ|1|1H|G|1385
*
6QNQ|1|1H|C|1402
6QNQ|1|1H|C|1403

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23