J3_6QNQ_047
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 6QNQ|1|1H|G|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QNQ_047 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.1227
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6QNQ|1|1H|C|2295
6QNQ|1|1H|U|2296
6QNQ|1|1H|C|2297
*
6QNQ|1|1H|G|2321
6QNQ|1|1H|A|2322
6QNQ|1|1H|G|2323
*
6QNQ|1|1H|U|2332
6QNQ|1|1H|A|2333
6QNQ|1|1H|G|2334
6QNQ|1|1H|A|2335
6QNQ|1|1H|A|2336
6QNQ|1|1H|G|2337
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 2K
- Transfer RNA; tRNA
- Chain 41
- 50S ribosomal protein L5
- Chain A8
- 50S ribosomal protein L18
- Chain I8
- 50S ribosomal protein L27
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