J3_6QNQ_048

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6QNQ|1|1H|A|2518, 6QNQ|1|1H|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNQ_048 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0895

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6QNQ|1|1H|C|2517
6QNQ|1|1H|A|2518
6QNQ|1|1H|U|2519
6QNQ|1|1H|C|2520
*
6QNQ|1|1H|G|2545
6QNQ|1|1H|U|2546
6QNQ|1|1H|U|2547
*
6QNQ|1|1H|A|2561
6QNQ|1|1H|U|2562
6QNQ|1|1H|U|2563
6QNQ|1|1H|A|2564
6QNQ|1|1H|A|2565
6QNQ|1|1H|A|2566
6QNQ|1|1H|G|2567

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 58

50S ribosomal protein L13

Chain 68

50S ribosomal protein L14