J3_6QNQ_059

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6QNQ|1|14|U|271|||C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNQ_059 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1545

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6QNQ|1|14|U|269
6QNQ|1|14|A|270
6QNQ|1|14|A|270|||A
6QNQ|1|14|A|270|||B
6QNQ|1|14|C|270|||C
*
6QNQ|1|14|G|270|||W
6QNQ|1|14|G|270|||X
6QNQ|1|14|G|270|||Y
6QNQ|1|14|U|270|||Z
6QNQ|1|14|C|271|||A
6QNQ|1|14|G|271|||B
6QNQ|1|14|U|271|||C
6QNQ|1|14|G|271
*
6QNQ|1|14|C|366
6QNQ|1|14|G|370

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28