J3_6QNQ_065
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 6QNQ|1|1G|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QNQ_065 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1335
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6QNQ|1|1G|C|586
6QNQ|1|1G|G|587
6QNQ|1|1G|G|588
*
6QNQ|1|1G|C|651
6QNQ|1|1G|U|652
6QNQ|1|1G|A|653
6QNQ|1|1G|G|654
6QNQ|1|1G|A|655
*
6QNQ|1|1G|U|751
6QNQ|1|1G|G|752
6QNQ|1|1G|A|753
6QNQ|1|1G|C|754
6QNQ|1|1G|G|755
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 3A
- 30S ribosomal protein S12
- Chain 6A
- 30S ribosomal protein S15
- Chain 72
- 30S ribosomal protein S8
- Chain 8A
- 30S ribosomal protein S17
Coloring options: