J3_6QNQ_076

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNQ_076 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0718

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6QNQ|1|1H|G|1424
6QNQ|1|1H|G|1425
6QNQ|1|1H|G|1426
6QNQ|1|1H|A|1427
6QNQ|1|1H|C|1428
6QNQ|1|1H|G|1429
*
6QNQ|1|1H|C|1564
6QNQ|1|1H|C|1565
*
6QNQ|1|1H|G|1568
6QNQ|1|1H|A|1569
6QNQ|1|1H|A|1570
6QNQ|1|1H|A|1571
6QNQ|1|1H|A|1572
6QNQ|1|1H|G|1573
6QNQ|1|1H|C|1574

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2