J3_6QNR_042

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6QNR|1|1H|U|289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_042 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.0686

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6QNR|1|1H|U|259
6QNR|1|1H|A|260
6QNR|1|1H|A|261
6QNR|1|1H|A|262
6QNR|1|1H|C|263
*
6QNR|1|1H|G|283
6QNR|1|1H|G|284
6QNR|1|1H|G|285
6QNR|1|1H|U|286
6QNR|1|1H|C|287
6QNR|1|1H|G|288
6QNR|1|1H|U|289
6QNR|1|1H|G|290
*
6QNR|1|1H|C|397
6QNR|1|1H|G|398

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28