J3_6QNR_044

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_044 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0592

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6QNR|1|1H|C|746
6QNR|1|1H|A|747
6QNR|1|1H|G|748
*
6QNR|1|1H|C|780
6QNR|1|1H|G|781
6QNR|1|1H|A|782
6QNR|1|1H|A|783
6QNR|1|1H|C|784
*
6QNR|1|1H|G|808
6QNR|1|1H|A|809
6QNR|1|1H|U|810
6QNR|1|1H|G|811

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2