J3_6QNR_085

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCGGA(4SU)AGCUCAGUCGGUAGAGCAG*CGU(7MG)UCCUU*GAGUCCGGG

Length

44 nucleotides

Bulged bases

6QNR|1|1K|U|16, 6QNR|1|1K|C|17, 6QNR|1|1K|G|18, 6QNR|1|1K|G|19, 6QNR|1|1K|U|20, 6QNR|1|1K|U|47

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNR|1|1K|C|2
6QNR|1|1K|C|3
6QNR|1|1K|C|4
6QNR|1|1K|G|5
6QNR|1|1K|G|6
6QNR|1|1K|A|7
6QNR|1|1K|4SU|8
6QNR|1|1K|A|9
6QNR|1|1K|G|10
6QNR|1|1K|C|11
6QNR|1|1K|U|12
6QNR|1|1K|C|13
6QNR|1|1K|A|14
6QNR|1|1K|G|15
6QNR|1|1K|U|16
6QNR|1|1K|C|17
6QNR|1|1K|G|18
6QNR|1|1K|G|19
6QNR|1|1K|U|20
6QNR|1|1K|A|21
6QNR|1|1K|G|22
6QNR|1|1K|A|23
6QNR|1|1K|G|24
6QNR|1|1K|C|25
6QNR|1|1K|A|26
6QNR|1|1K|G|27
*
6QNR|1|1K|C|43
6QNR|1|1K|G|44
6QNR|1|1K|U|45
6QNR|1|1K|7MG|46
6QNR|1|1K|U|47
6QNR|1|1K|C|48
6QNR|1|1K|C|49
6QNR|1|1K|U|50
6QNR|1|1K|U|51
*
6QNR|1|1K|G|63
6QNR|1|1K|A|64
6QNR|1|1K|G|65
6QNR|1|1K|U|66
6QNR|1|1K|C|67
6QNR|1|1K|C|68
6QNR|1|1K|G|69
6QNR|1|1K|G|70
6QNR|1|1K|G|71

Current chains

Chain 1K

E. coli tRNAPhe

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 2K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16