J3_6QT0_016

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAC*GAUACGU*AAUCUU

Length

16 nucleotides

Bulged bases

6QT0|1|y|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QT0|1|y|A|43
6QT0|1|y|A|44
6QT0|1|y|C|45
*
6QT0|1|y|G|58
6QT0|1|y|A|59
6QT0|1|y|U|60
6QT0|1|y|A|61
6QT0|1|y|C|62
6QT0|1|y|G|63
6QT0|1|y|U|64
*
6QT0|1|y|A|96
6QT0|1|y|A|97
6QT0|1|y|U|98
6QT0|1|y|C|99
6QT0|1|y|U|100
6QT0|1|y|U|101

Current chains

Chain y

5.8S rRNA

Nearby chains

Chain W

60S ribosomal protein L25

Chain Z

60S ribosomal protein L35-A

Chain i

60S ribosomal protein L37-A

Chain k

60S ribosomal protein L39