Loop J3_6QT0

3D structure

PDB id: 6QT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: AAUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUUU
Length: 38 nucleotides
Bulged bases: 6QT0|1|A|A|3172, 6QT0|1|A|G|3173, 6QT0|1|A|A|3215, 6QT0|1|A|G|3216, 6QT0|1|A|C|3217, 6QT0|1|A|A|3218, 6QT0|1|A|G|3219, 6QT0|1|A|A|3268, 6QT0|1|A|U|3270, 6QT0|1|A|C|3272
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6QT0|1|A|A|3167
6QT0|1|A|A|3168
6QT0|1|A|U|3169
6QT0|1|A|A|3170
6QT0|1|A|U|3171
6QT0|1|A|A|3172
6QT0|1|A|G|3173
6QT0|1|A|A|3174
6QT0|1|A|U|3175
6QT0|1|A|G|3176
*
6QT0|1|A|C|3212
6QT0|1|A|A|3213
6QT0|1|A|U|3214
6QT0|1|A|A|3215
6QT0|1|A|G|3216
6QT0|1|A|C|3217
6QT0|1|A|A|3218
6QT0|1|A|G|3219
6QT0|1|A|G|3220
*
6QT0|1|A|C|3265
6QT0|1|A|G|3266
6QT0|1|A|A|3267
6QT0|1|A|A|3268
6QT0|1|A|U|3269
6QT0|1|A|U|3270
6QT0|1|A|G|3271
6QT0|1|A|C|3272
6QT0|1|A|A|3273
6QT0|1|A|A|3274
6QT0|1|A|U|3275
6QT0|1|A|G|3276
6QT0|1|A|U|3277
6QT0|1|A|C|3278
6QT0|1|A|A|3279
6QT0|1|A|U|3280
6QT0|1|A|U|3281
6QT0|1|A|U|3282
6QT0|1|A|U|3283

Current chains

Chain A: 25S rRNA

Nearby chains

Chain G: 60S ribosomal protein L6-A
Chain J: 60S ribosomal protein L16-B
Chain M: 60S ribosomal protein L14-A
Chain f: 60S ribosomal protein L33-A

J3_6QT0_027