J3_6QTZ_015
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QTZ_015 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.1492
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6QTZ|1|A|C|3298
6QTZ|1|A|A|3299
6QTZ|1|A|U|3300
*
6QTZ|1|A|A|3314
6QTZ|1|A|G|3315
6QTZ|1|A|A|3316
6QTZ|1|A|U|3317
6QTZ|1|A|G|3318
*
6QTZ|1|A|C|3388
6QTZ|1|A|U|3389
6QTZ|1|A|G|3390
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L3
- Chain U
- 60S ribosomal protein L17-A
- Chain d
- 60S ribosomal protein L31-A
Coloring options: