J3_6QTZ_018
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 6QTZ|1|A|U|117, 6QTZ|1|A|G|120, 6QTZ|1|A|A|121, 6QTZ|1|A|U|147, 6QTZ|1|A|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QTZ|1|A|C|113
6QTZ|1|A|A|114
6QTZ|1|A|A|115
6QTZ|1|A|A|116
6QTZ|1|A|U|117
6QTZ|1|A|U|118
6QTZ|1|A|U|119
6QTZ|1|A|G|120
6QTZ|1|A|A|121
6QTZ|1|A|A|122
6QTZ|1|A|A|123
6QTZ|1|A|U|124
*
6QTZ|1|A|A|144
6QTZ|1|A|G|145
6QTZ|1|A|U|146
6QTZ|1|A|U|147
6QTZ|1|A|G|148
6QTZ|1|A|U|149
6QTZ|1|A|A|150
6QTZ|1|A|A|151
6QTZ|1|A|U|152
6QTZ|1|A|U|153
6QTZ|1|A|U|154
6QTZ|1|A|G|155
6QTZ|1|A|G|156
6QTZ|1|A|A|157
6QTZ|1|A|G|158
*
6QTZ|1|A|C|263
6QTZ|1|A|G|264
6QTZ|1|A|A|265
6QTZ|1|A|A|266
6QTZ|1|A|G|267
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L8-A
- Chain K
- 60S ribosomal protein L13-A
- Chain O
- 60S ribosomal protein L15-A
- Chain Z
- 60S ribosomal protein L35-A
- Chain h
- 60S ribosomal protein L36-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: