J3_6QTZ_027
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 6QTZ|1|A|A|3172, 6QTZ|1|A|G|3173, 6QTZ|1|A|A|3174, 6QTZ|1|A|U|3175, 6QTZ|1|A|A|3215, 6QTZ|1|A|G|3216, 6QTZ|1|A|C|3217, 6QTZ|1|A|A|3218, 6QTZ|1|A|G|3219, 6QTZ|1|A|A|3268, 6QTZ|1|A|U|3270, 6QTZ|1|A|C|3272, 6QTZ|1|A|U|3275, 6QTZ|1|A|G|3276, 6QTZ|1|A|U|3277, 6QTZ|1|A|C|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QTZ_027 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.2714
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6QTZ|1|A|U|3171
6QTZ|1|A|A|3172
6QTZ|1|A|G|3173
6QTZ|1|A|A|3174
6QTZ|1|A|U|3175
6QTZ|1|A|G|3176
*
6QTZ|1|A|C|3212
6QTZ|1|A|A|3213
6QTZ|1|A|U|3214
6QTZ|1|A|A|3215
6QTZ|1|A|G|3216
6QTZ|1|A|C|3217
6QTZ|1|A|A|3218
6QTZ|1|A|G|3219
6QTZ|1|A|G|3220
*
6QTZ|1|A|C|3265
6QTZ|1|A|G|3266
6QTZ|1|A|A|3267
6QTZ|1|A|A|3268
6QTZ|1|A|U|3269
6QTZ|1|A|U|3270
6QTZ|1|A|G|3271
6QTZ|1|A|C|3272
6QTZ|1|A|A|3273
6QTZ|1|A|A|3274
6QTZ|1|A|U|3275
6QTZ|1|A|G|3276
6QTZ|1|A|U|3277
6QTZ|1|A|C|3278
6QTZ|1|A|A|3279
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L6-A
- Chain J
- 60S ribosomal protein L16-B
- Chain M
- 60S ribosomal protein L14-A
- Chain f
- 60S ribosomal protein L33-A
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