3D structure

PDB id
6QUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
6QUL|1|A|U|686, 6QUL|1|A|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QUL_003 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.327
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

6QUL|1|A|U|683
6QUL|1|A|G|684
6QUL|1|A|A|685
6QUL|1|A|U|686
6QUL|1|A|C|687
6QUL|1|A|U|688
6QUL|1|A|A|689
*
6QUL|1|A|U|773
6QUL|1|A|G|774
6QUL|1|A|G|775
*
6QUL|1|A|C|791
6QUL|1|A|A|792
6QUL|1|A|A|793
6QUL|1|A|A|794

Current chains

Chain A
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain d
50S ribosomal protein L34

Coloring options:


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