J3_6QUL_005

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QUL_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1826

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6QUL|1|A|G|1055
6QUL|1|A|G|1056
6QUL|1|A|A|1057
*
6QUL|1|A|U|1081
6QUL|1|A|U|1082
6QUL|1|A|U|1083
6QUL|1|A|A|1084
6QUL|1|A|A|1085
6QUL|1|A|A|1086
6QUL|1|A|G|1087
*
6QUL|1|A|C|1102
6QUL|1|A|A|1103
6QUL|1|A|C|1104

Current chains

Chain A

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L36