J3_6QZP_009

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6QZP|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|A|2551
6QZP|1|L5|G|2552
6QZP|1|L5|A|2553
6QZP|1|L5|U|2554
6QZP|1|L5|G|2555
*
6QZP|1|L5|C|2572
6QZP|1|L5|A|2573
6QZP|1|L5|G|2574
6QZP|1|L5|U|2575
*
6QZP|1|L5|A|2757
6QZP|1|L5|G|2758
6QZP|1|L5|G|2759
6QZP|1|L5|G|2760
6QZP|1|L5|U|2761
6QZP|1|L5|G|2762
6QZP|1|L5|U|2763
6QZP|1|L5|A|2764
6QZP|1|L5|A|2765
6QZP|1|L5|A|2766
6QZP|1|L5|U|2767

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LZ

60S ribosomal protein L27