J3_6R5Q_011

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6R5Q|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R5Q|1|5|A|2551
6R5Q|1|5|G|2552
6R5Q|1|5|A|2553
6R5Q|1|5|U|2554
6R5Q|1|5|G|2555
*
6R5Q|1|5|C|2572
6R5Q|1|5|A|2573
6R5Q|1|5|G|2574
6R5Q|1|5|U|2575
*
6R5Q|1|5|A|2757
6R5Q|1|5|G|2758
6R5Q|1|5|G|2759
6R5Q|1|5|G|2760
6R5Q|1|5|U|2761
6R5Q|1|5|G|2762
6R5Q|1|5|U|2763
6R5Q|1|5|A|2764
6R5Q|1|5|A|2765
6R5Q|1|5|A|2766
6R5Q|1|5|U|2767

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27