J3_6R5Q_038
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 6R5Q|1|5|C|2470, 6R5Q|1|5|A|2472, 6R5Q|1|5|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R5Q_038 not in the Motif Atlas
- Homologous match to J3_8GLP_031
- Geometric discrepancy: 0.5005
- The information below is about J3_8GLP_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_53783.2
- Basepair signature
- cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F
- Number of instances in this motif group
- 3
Unit IDs
6R5Q|1|5|A|2451
6R5Q|1|5|G|2452
6R5Q|1|5|A|2453
6R5Q|1|5|U|2454
6R5Q|1|5|G|2455
6R5Q|1|5|G|2456
*
6R5Q|1|5|C|2465
6R5Q|1|5|G|2466
6R5Q|1|5|U|2467
6R5Q|1|5|U|2468
6R5Q|1|5|C|2469
6R5Q|1|5|C|2470
6R5Q|1|5|G|2471
6R5Q|1|5|A|2472
6R5Q|1|5|A|2473
6R5Q|1|5|G|2474
6R5Q|1|5|G|2475
6R5Q|1|5|G|2476
*
6R5Q|1|5|C|2501
6R5Q|1|5|A|2502
6R5Q|1|5|G|2503
6R5Q|1|5|C|2504
6R5Q|1|5|C|2505
6R5Q|1|5|G|2506
6R5Q|1|5|A|2507
6R5Q|1|5|U|2508
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- Ribosomal protein L15
- Chain X
- uL23
- Chain j
- Ribosomal protein L37
Coloring options: