J3_6R5Q_039
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R5Q_039 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1513
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6R5Q|1|5|A|2598
6R5Q|1|5|G|2599
6R5Q|1|5|A|2600
6R5Q|1|5|A|2601
6R5Q|1|5|G|2602
*
6R5Q|1|5|C|2737
6R5Q|1|5|C|2738
*
6R5Q|1|5|G|2742
6R5Q|1|5|A|2743
6R5Q|1|5|A|2744
6R5Q|1|5|A|2745
6R5Q|1|5|A|2746
6R5Q|1|5|U|2747
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain g
- eL34
- Chain p
- ribosomal protein eL43
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