J3_6R5Q_046

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R5Q_046 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2298

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6R5Q|1|5|G|1969
6R5Q|1|5|A|1970
6R5Q|1|5|U|1971
*
6R5Q|1|5|G|1995
6R5Q|1|5|C|1996
6R5Q|1|5|U|1997
6R5Q|1|5|A|1998
6R5Q|1|5|A|1999
6R5Q|1|5|G|2000
6R5Q|1|5|G|2001
*
6R5Q|1|5|C|2016
6R5Q|1|5|A|2017
6R5Q|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11