J3_6R6G_005
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 6R6G|1|5|A|1173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1822
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6R6G|1|5|G|1105
6R6G|1|5|C|1106
6R6G|1|5|A|1107
6R6G|1|5|G|1108
*
6R6G|1|5|C|1140
6R6G|1|5|G|1141
6R6G|1|5|U|1142
6R6G|1|5|A|1143
6R6G|1|5|G|1144
*
6R6G|1|5|U|1169
6R6G|1|5|C|1170
6R6G|1|5|C|1171
6R6G|1|5|G|1172
6R6G|1|5|A|1173
6R6G|1|5|C|1174
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain R
- 60S ribosomal protein L19
- Chain g
- eL34
- Chain p
- ribosomal protein eL43
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