3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCAG*CGUAG*UCCGAC
Length
15 nucleotides
Bulged bases
6R6G|1|5|A|1173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6R6G_005 not in the Motif Atlas
Homologous match to J3_5TBW_005
Geometric discrepancy: 0.1822
The information below is about J3_5TBW_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_33851.1
Basepair signature
cWW-tSH-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6R6G|1|5|G|1105
6R6G|1|5|C|1106
6R6G|1|5|A|1107
6R6G|1|5|G|1108
*
6R6G|1|5|C|1140
6R6G|1|5|G|1141
6R6G|1|5|U|1142
6R6G|1|5|A|1143
6R6G|1|5|G|1144
*
6R6G|1|5|U|1169
6R6G|1|5|C|1170
6R6G|1|5|C|1171
6R6G|1|5|G|1172
6R6G|1|5|A|1173
6R6G|1|5|C|1174

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
uL2
Chain R
60S ribosomal protein L19
Chain g
eL34
Chain p
ribosomal protein eL43

Coloring options:


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