J3_6R6G_010

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_010 not in the Motif Atlas

Homologous match to J3_5TBW_010

Geometric discrepancy: 0.1753

The information below is about J3_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70383.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

6R6G|1|5|U|1833
6R6G|1|5|C|1834
6R6G|1|5|G|1835
6R6G|1|5|G|1836
6R6G|1|5|U|1837
6R6G|1|5|C|1838
*
6R6G|1|5|G|1908
6R6G|1|5|G|1909
6R6G|1|5|A|1910
6R6G|1|5|G|1911
6R6G|1|5|U|1912
*
6R6G|1|5|A|1929
6R6G|1|5|A|1930

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain X

uL23

Chain g

eL34

Chain k

60S ribosomal protein L38

Chain l

eL39