J3_6R6G_013
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_013 not in the Motif Atlas
- Geometric match to J3_8VTW_006
- Geometric discrepancy: 0.2908
- The information below is about J3_8VTW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.4
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6R6G|1|5|C|2635
6R6G|1|5|G|2636
6R6G|1|5|G|2637
*
6R6G|1|5|C|2656
6R6G|1|5|U|2657
6R6G|1|5|G|2658
6R6G|1|5|A|2659
6R6G|1|5|C|2660
*
6R6G|1|5|G|2738
6R6G|1|5|G|2739
6R6G|1|5|A|2740
6R6G|1|5|C|2741
6R6G|1|5|A|2742
6R6G|1|5|G|2743
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- Ribosomal protein L15
Coloring options: