J3_6R6G_015
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6R6G|1|5|A|2850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_015 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1453
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6R6G|1|5|C|2811
6R6G|1|5|U|2812
6R6G|1|5|C|2813
*
6R6G|1|5|G|2837
6R6G|1|5|A|2838
6R6G|1|5|G|2839
*
6R6G|1|5|C|2848
6R6G|1|5|A|2849
6R6G|1|5|A|2850
6R6G|1|5|A|2851
6R6G|1|5|A|2852
6R6G|1|5|G|2853
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L5
- Chain J
- Ribosomal protein L11
- Chain T
- eL21
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