J3_6R6G_020

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CG*UGUAGU*AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_020 not in the Motif Atlas

Geometric match to J3_1E8O_001

Geometric discrepancy: 0.173

The information below is about J3_1E8O_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11375.2

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

6R6G|1|AF|C|3
6R6G|1|AF|G|4
*
6R6G|1|AF|U|23
6R6G|1|AF|G|24
6R6G|1|AF|U|25
6R6G|1|AF|A|26
6R6G|1|AF|G|27
6R6G|1|AF|U|28
*
6R6G|1|AF|A|43
6R6G|1|AF|G|44

Current chains

Chain AF

7S RNA

Nearby chains

Chain AD

Signal recognition particle 9 kDa protein

Chain AE

Signal recognition particle 14 kDa protein