J3_6R6G_026

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6R6G|1|K|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|K|C|1094
6R6G|1|K|U|1095
6R6G|1|K|G|1096
*
6R6G|1|K|U|1136
6R6G|1|K|U|1137
6R6G|1|K|C|1138
6R6G|1|K|C|1139
6R6G|1|K|G|1140
*
6R6G|1|K|C|1147
6R6G|1|K|A|1148
6R6G|1|K|A|1149
6R6G|1|K|A|1150
6R6G|1|K|G|1151

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain HH

40S ribosomal protein S21

Chain JJ

40S ribosomal protein S27

Chain LL

40S ribosomal protein S26

Chain QQ

ribosomal protein uS15

Chain TT

Ribosomal protein S15a

Chain q

uS2