J3_6R6G_031

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_031 not in the Motif Atlas

Homologous match to J3_8P9A_080

Geometric discrepancy: 0.3768

The information below is about J3_8P9A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_99563.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6R6G|1|K|U|1340
6R6G|1|K|C|1341
6R6G|1|K|U|1342
6R6G|1|K|U|1343
6R6G|1|K|A|1344
6R6G|1|K|G|1345
*
6R6G|1|K|C|1384
6R6G|1|K|G|1385
6R6G|1|K|A|1386
6R6G|1|K|G|1387
6R6G|1|K|A|1388
6R6G|1|K|C|1389
*
6R6G|1|K|G|1481
6R6G|1|K|C|1482
6R6G|1|K|A|1483
6R6G|1|K|A|1484
6R6G|1|K|U|1485
6R6G|1|K|A|1486

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 9

uS14

Chain GG

Ribosomal protein S20

Chain KK

eS17

Chain UU

Ribosomal protein S16

Chain v

uS5

Chain w

Ribosomal protein S3