J3_6R6G_039

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_039 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1647

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6R6G|1|5|A|1991
6R6G|1|5|G|1992
6R6G|1|5|A|1993
6R6G|1|5|A|1994
6R6G|1|5|G|1995
*
6R6G|1|5|C|2130
6R6G|1|5|C|2131
*
6R6G|1|5|G|2135
6R6G|1|5|A|2136
6R6G|1|5|A|2137
6R6G|1|5|A|2138
6R6G|1|5|A|2139
6R6G|1|5|U|2140

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain g

eL34

Chain p

ribosomal protein eL43