J3_6R6G_040
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 6R6G|1|5|U|2944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_040 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1024
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6R6G|1|5|G|2798
6R6G|1|5|U|2799
6R6G|1|5|C|2800
*
6R6G|1|5|G|2901
6R6G|1|5|C|2902
6R6G|1|5|C|2903
6R6G|1|5|U|2904
6R6G|1|5|C|2905
6R6G|1|5|A|2906
6R6G|1|5|C|2907
6R6G|1|5|G|2908
6R6G|1|5|A|2909
6R6G|1|5|U|2910
6R6G|1|5|C|2911
6R6G|1|5|C|2912
*
6R6G|1|5|G|2940
6R6G|1|5|G|2941
6R6G|1|5|U|2942
6R6G|1|5|G|2943
6R6G|1|5|U|2944
6R6G|1|5|C|2945
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- eL42
Coloring options: