J3_6R6P_036
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6R6P|1|5|G|409, 6R6P|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6P_036 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2969
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6R6P|1|5|U|380
6R6P|1|5|U|381
6R6P|1|5|G|382
6R6P|1|5|A|383
6R6P|1|5|A|384
6R6P|1|5|A|385
6R6P|1|5|A|386
6R6P|1|5|G|387
6R6P|1|5|A|388
6R6P|1|5|A|389
6R6P|1|5|C|390
*
6R6P|1|5|G|401
6R6P|1|5|A|402
6R6P|1|5|G|403
6R6P|1|5|U|404
6R6P|1|5|U|405
6R6P|1|5|C|406
6R6P|1|5|A|407
6R6P|1|5|A|408
6R6P|1|5|G|409
6R6P|1|5|A|410
6R6P|1|5|G|411
6R6P|1|5|G|412
6R6P|1|5|G|413
6R6P|1|5|C|414
6R6P|1|5|G|415
*
6R6P|1|8|C|19
6R6P|1|8|A|20
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain P
- uL22
- Chain Y
- Ribosomal protein L26
- Chain l
- ribosomal protein eL39
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