J3_6R7Q_001

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6R7Q|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R7Q|1|5|C|112
6R7Q|1|5|A|113
6R7Q|1|5|G|114
6R7Q|1|5|C|115
6R7Q|1|5|G|116
*
6R7Q|1|5|C|155
6R7Q|1|5|G|156
6R7Q|1|5|U|157
6R7Q|1|5|A|158
6R7Q|1|5|C|159
6R7Q|1|5|G|160
*
6R7Q|1|5|C|275
6R7Q|1|5|C|276
6R7Q|1|5|G|277
6R7Q|1|5|G|278

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

eL8

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

uL29

Chain i

60S ribosomal protein L36