J3_6R7Q_030

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

6R7Q|1|K|A|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R7Q_030 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1235

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6R7Q|1|K|U|1350
6R7Q|1|K|G|1351
*
6R7Q|1|K|U|1360
6R7Q|1|K|G|1361
6R7Q|1|K|U|1362
6R7Q|1|K|C|1363
*
6R7Q|1|K|G|1375
6R7Q|1|K|A|1376
6R7Q|1|K|U|1377
6R7Q|1|K|A|1378
6R7Q|1|K|A|1379

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain KK

eS17

Chain q

uS2

Chain v

uS5