J3_6R7Q_043

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6R7Q|1|K|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R7Q_043 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0789

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6R7Q|1|K|A|40
6R7Q|1|K|G|41
6R7Q|1|K|A|42
6R7Q|1|K|U|43
6R7Q|1|K|U|44
6R7Q|1|K|A|45
6R7Q|1|K|A|46
6R7Q|1|K|G|47
*
6R7Q|1|K|C|479
6R7Q|1|K|G|480
6R7Q|1|K|C|481
6R7Q|1|K|G|482
6R7Q|1|K|C|483
6R7Q|1|K|A|484
6R7Q|1|K|A|485
6R7Q|1|K|A|486
6R7Q|1|K|U|487
*
6R7Q|1|K|A|512
6R7Q|1|K|G|513
6R7Q|1|K|U|514

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain VV

Ribosomal protein S23