J3_6R84_022
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6R84|1|1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R84_022 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1096
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6R84|1|1|G|2651
6R84|1|1|U|2652
6R84|1|1|C|2653
*
6R84|1|1|G|2754
6R84|1|1|C|2755
6R84|1|1|C|2756
6R84|1|1|U|2757
6R84|1|1|A|2758
6R84|1|1|U|2759
6R84|1|1|C|2760
6R84|1|1|G|2761
6R84|1|1|A|2762
6R84|1|1|U|2763
6R84|1|1|C|2764
6R84|1|1|C|2765
*
6R84|1|1|G|2793
6R84|1|1|G|2794
6R84|1|1|U|2795
6R84|1|1|G|2796
6R84|1|1|C|2797
6R84|1|1|C|2798
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- ABC transporter ATP-binding protein ARB1
- Chain C
- 60S ribosomal protein L42-A
- Chain S
- 60S ribosomal protein L18-A
- Chain V
- 60S ribosomal protein L21-A
- Chain c
- 60S ribosomal protein L28
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