J3_6R86_022
3D structure
- PDB id
- 6R86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1-60S ribosomal subunit complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- 6R86|1|1|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R86_022 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.3517
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R86|1|1|A|2432
6R86|1|1|U|2433
6R86|1|1|U|2434
6R86|1|1|G|2435
*
6R86|1|1|C|2512
6R86|1|1|U|2513
6R86|1|1|U|2514
6R86|1|1|A|2515
6R86|1|1|U|2516
*
6R86|1|1|A|2591
6R86|1|1|G|2592
6R86|1|1|A|2593
6R86|1|1|C|2594
6R86|1|1|A|2595
6R86|1|1|U|2596
6R86|1|1|U|2597
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L2-A
- Chain K
- 60S ribosomal protein L8-A
- Chain k
- 60S ribosomal protein L36-A
- Chain p
- 60S ribosomal protein L15-A
Coloring options: