3D structure

PDB id
6R87 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAAAUUUGAAA*UAAUUUGGAG*CGAAG
Length
26 nucleotides
Bulged bases
6R87|1|1|U|117, 6R87|1|1|G|156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6R87_001 not in the Motif Atlas
Homologous match to J3_8P9A_042
Geometric discrepancy: 0.1173
The information below is about J3_8P9A_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19664.1
Basepair signature
cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6R87|1|1|C|113
6R87|1|1|A|114
6R87|1|1|A|115
6R87|1|1|A|116
6R87|1|1|U|117
6R87|1|1|U|118
6R87|1|1|U|119
6R87|1|1|G|120
6R87|1|1|A|121
6R87|1|1|A|122
6R87|1|1|A|123
*
6R87|1|1|U|149
6R87|1|1|A|150
6R87|1|1|A|151
6R87|1|1|U|152
6R87|1|1|U|153
6R87|1|1|U|154
6R87|1|1|G|155
6R87|1|1|G|156
6R87|1|1|A|157
6R87|1|1|G|158
*
6R87|1|1|C|263
6R87|1|1|G|264
6R87|1|1|A|265
6R87|1|1|A|266
6R87|1|1|G|267

Current chains

Chain 1
25S rRNA

Nearby chains

Chain K
60S ribosomal protein L8-A
Chain N
60S ribosomal protein L13-A
Chain j
60S ribosomal protein L35-A
Chain k
60S ribosomal protein L36-A
Chain p
60S ribosomal protein L15-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2519 s