J3_6R87_007

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R87_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2583

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6R87|1|1|G|1230
6R87|1|1|A|1231
6R87|1|1|C|1232
*
6R87|1|1|G|1256
6R87|1|1|C|1257
6R87|1|1|U|1258
6R87|1|1|A|1259
6R87|1|1|A|1260
6R87|1|1|G|1261
6R87|1|1|G|1262
*
6R87|1|1|C|1277
6R87|1|1|A|1278
6R87|1|1|C|1279

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L12-A

Chain r

60S acidic ribosomal protein P0