J3_6R87_011
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R87_011 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.1012
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6R87|1|1|A|2432
6R87|1|1|U|2433
6R87|1|1|U|2434
6R87|1|1|G|2435
*
6R87|1|1|C|2512
6R87|1|1|U|2513
6R87|1|1|U|2514
6R87|1|1|A|2515
6R87|1|1|U|2516
6R87|1|1|U|2517
*
6R87|1|1|A|2590
6R87|1|1|A|2591
6R87|1|1|G|2592
6R87|1|1|A|2593
6R87|1|1|C|2594
6R87|1|1|A|2595
6R87|1|1|U|2596
6R87|1|1|U|2597
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L2-A
- Chain K
- 60S ribosomal protein L8-A
- Chain k
- 60S ribosomal protein L36-A
- Chain p
- 60S ribosomal protein L15-A
Coloring options: