J3_6RBD_001

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RBD_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1232

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6RBD|1|2|A|41
6RBD|1|2|G|42
*
6RBD|1|2|C|433
6RBD|1|2|G|434
6RBD|1|2|C|435
6RBD|1|2|A|436
6RBD|1|2|A|437
6RBD|1|2|A|438
6RBD|1|2|U|439
*
6RBD|1|2|A|464
6RBD|1|2|G|465
6RBD|1|2|U|466

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain k

Ribosome biogenesis protein TSR1